Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								a65338a8bf 
								
							
								 
							
						 
						
							
							
								
								* Added "wgo" (what's going on) to check the status of processes  
							
							 
							
							... 
							
							
 
							
							on login node. Currently supposed to be used for Turing only. 
							
						 
						
							7 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								1387997010 
								
							
								 
							
						 
						
							
							
								
								* Prints an error message and quit in case Jupyter  
							
							 
							
							... 
							
							
 
							
							did not start after 2 minutes. 
							
						 
						
							7 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								ba6c9f53ed 
								
							
								 
							
						 
						
							
							
								
								* Added accommodation for Anaconda as well as site-provided python.  
							
							 
							
							... 
							
							
 
							
							* Added support for fully headless mode (connect via local browser).
* Added some safeguards against job failing to start due to executable
  not found, etc. 
							
						 
						
							7 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								1c8a5da492 
								
							
								 
							
						 
						
							
							
								
								* Imported launch_jupyter from Turing.  
							
							 
							
							... 
							
							
 
							
							Originally furnished by Min Dong, 2019-03-01 14:30 EST. 
							
						 
						
							7 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								28eb7a0d98 
								
							
								 
							
						 
						
							
							
								
								* sq: Customizable squeue wrapper: introduce new defaults / default  
							
							 
							
							... 
							
							
 
							
							behavior on squeue. 
							
						 
						
							7 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								94e0aa9490 
								
							
								 
							
						 
						
							
							
								
								* jupyter-anaconda2: A script that will start Jupyter notebook process  
							
							 
							
							... 
							
							
 
							
							for Anaconda2 distribution.
  Note: for now it is a script that has to be submitted in the compute
  node. I will upgrade this to become a self-submitting script eventually. 
							
						 
						
							7 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								95034685ff 
								
							
								 
							
						 
						
							
							
								
								* interact: Tool to allocate an interactive session on a regular  
							
							 
							
							... 
							
							
 
							
							compute node under SLURM. 
							
						 
						
							8 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								dbce662c5a 
								
							
								 
							
						 
						
							
							
								
								* interact-gpu: Tool to allocate an interactive session on a GPU  
							
							 
							
							... 
							
							
 
							
							compute node under SLURM. 
							
						 
						
							8 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								82ea3bc689 
								
							
								 
							
						 
						
							
							
								
								* Archived: SGE version of pwscf-5.3 script.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								9c82c4d465 
								
							
								 
							
						 
						
							
							
								
								* Update bash module support: with recent changes on Turing,  
							
							 
							
							... 
							
							
 
							
							'module' seems to be supported out of the box for bash.
  If 'module' environment is detected, we skip the initiation step. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								68c0e70d4d 
								
							
								 
							
						 
						
							
							
								
								* Added "regular" runsas which runs with more limited memory.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								27b8ccd6ae 
								
							
								 
							
						 
						
							
							
								
								* Added runsas-himem from earlier consultation this year.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								df6facce86 
								
							
								 
							
						 
						
							
							
								
								* pwscf: Ad-hoc fix for Turing after 2016 upgrade.  
							
							 
							
							... 
							
							
 
							
							We force using the old (TCL) module system since the new module
  system (LMOD) always executes itself whenever a bash batch script
  is executed on Turing right now. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								739d765f53 
								
							
								 
							
						 
						
							
							
								
								* Added convenience for gathering & analyzing CPUs on the cluster.  
							
							 
							
							... 
							
							
 
							
							* Documentation update. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								aa597b907c 
								
							
								 
							
						 
						
							
							
								
								* In hoststats subcommand: Also print node status flags if they exist.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								999fe5f571 
								
							
								 
							
						 
						
							
							
								
								* Add more info to gather.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								cabacb58cb 
								
							
								 
							
						 
						
							
							
								
								* Also added dump for mount points and disk free for compute nodes.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								b6d22cf68b 
								
							
								 
							
						 
						
							
							
								
								* Added "hoststats" subcommand for summarizing host occupancy statistics  
							
							 
							
							... 
							
							
 
							
							irrespective of queue. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								ebdc93e80f 
								
							
								 
							
						 
						
							
							
								
								* Also collect dmesg snapshot.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								879927f16e 
								
							
								 
							
						 
						
							
							
								
								* Added python workbench hpl_timing, for estimating/analyzing HPL timing.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								d6d71364de 
								
							
								 
							
						 
						
							
							
								
								* Imported initial tools for extracting HPL benchmark results.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								483c6874c0 
								
							
								 
							
						 
						
							
							
								
								* Use getopt to handle command-line option.  
							
							 
							
							... 
							
							
 
							
							* Include a help command. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								67bc899f4a 
								
							
								 
							
						 
						
							
							
								
								* Fixes for unhandled/unrecognized command options.  
							
							 
							
							... 
							
							
 
							
							* Documentation update.
* Added help command. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								850bd34377 
								
							
								 
							
						 
						
							
							
								
								* Documentation update.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								e382a5eb35 
								
							
								 
							
						 
						
							
							
								
								* Minor fix to strip domain name (can be truncated).  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								f06803ba6c 
								
							
								 
							
						 
						
							
							
								
								* show-node-status.py: A toolbox to analyze node status returned by SGE.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								acfb11e010 
								
							
								 
							
						 
						
							
							
								
								* Initial form of documentation.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								04515dcd35 
								
							
								 
							
						 
						
							
							
								
								* Allow external qstat-f file for raw node status dump.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								7957b28a05 
								
							
								 
							
						 
						
							
							
								
								* show-node-status.py: Initial tool to replace node-slot-status.sh.  
							
							 
							
							... 
							
							
 
							
							This initial edition contains only "--raw" command. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								34a7659f3d 
								
							
								 
							
						 
						
							
							
								
								* show-cluster-usage.py: A tool to summarize the usage of an  
							
							 
							
							... 
							
							
 
							
							SGE cluster at a given snapshot in time.
  At present the usage is broken down by the user;
  other categories can be added in the future. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								4f28615bf0 
								
							
								 
							
						 
						
							
							
								
								* Added variants of node status to display (still work in progress).  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								a0ad7c25bc 
								
							
								 
							
						 
						
							
							
								
								* Added analysis tool to summarize CPUs or group compute nodes based  
							
							 
							
							... 
							
							
 
							
							on their CPUs. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								52619c3688 
								
							
								 
							
						 
						
							
							
								
								* Added tools to dump compute node info in batch.  
							
							 
							
							
 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								f1327c9562 
								
							
								 
							
						 
						
							
							
								
								* SGE: Added qconf dump tools.  
							
							 
							
							... 
							
							
 
							
							Added from my hpc-explore/sge tools from late 2015 time frame. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								79e5b77df2 
								
							
								 
							
						 
						
							
							
								
								* bash-module-env.sh: Update was required due to incomplete pre-existing  
							
							 
							
							... 
							
							
 
							
							MODULEPATH in some of Turing's compute nodes. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								6f0880c547 
								
							
								 
							
						 
						
							
							
								
								* bash-module-env.sh: an effort to facilitate bash support for batch  
							
							 
							
							... 
							
							
 
							
							scripts.
  Last modified date of this script: 2016-06-23. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								bf43a3b0b5 
								
							
								 
							
						 
						
							
							
								
								* sge-dump-job-status.sh: Initial version of a tool to dump desirable  
							
							 
							
							... 
							
							
 
							
							SGE info from a running job. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								8b99995409 
								
							
								 
							
						 
						
							
							
								
								* Added find-run-hosts.sh: swiss-army tool to find hosts where a job  
							
							 
							
							... 
							
							
 
							
							run, dump the process trees, etc. 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								8ae0841ca6 
								
							
								 
							
						 
						
							
							
								
								* pwscf: Initial version of self-submitting script to launch pwscf  
							
							 
							
							... 
							
							
 
							
							calculation (version 5.3). 
							
						 
						
							9 years ago  
						
					 
				
					
						
							
							
								 
								Wirawan Purwanto
							
						 
						
							 
							
							
							
								
							
								7f83f897c8 
								
							
								 
							
						 
						
							
							
								
								* sge: Added node-slot-status.sh to aggregate slot availability per node type.  
							
							 
							
							
 
							
						 
						
							10 years ago