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@ -173,7 +173,9 @@ def fit_func(Funct, Data=None, Guess=None, x=None, y=None, |
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if Data != None: # an alternative way to specifying x and y |
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if Data != None: # an alternative way to specifying x and y |
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y = Data[0] |
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y = Data[0] |
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x = Data[1:] # possibly multidimensional! |
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x = Data[1:] # possibly multidimensional! |
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if hasattr(Funct, "Guess_xy"): |
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if Guess != None: |
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pass |
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elif hasattr(Funct, "Guess_xy"): |
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# Try to provide an initial guess |
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# Try to provide an initial guess |
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Guess = Funct.Guess_xy(x, y) |
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Guess = Funct.Guess_xy(x, y) |
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elif hasattr(Funct, "Guess"): |
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elif hasattr(Funct, "Guess"): |
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@ -211,6 +213,7 @@ def fit_func(Funct, Data=None, Guess=None, x=None, y=None, |
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print "Guess params:" |
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print "Guess params:" |
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print Guess |
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print Guess |
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extra_keys = {} |
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if method == 'leastsq': |
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if method == 'leastsq': |
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# modified Levenberg-Marquardt algorithm |
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# modified Levenberg-Marquardt algorithm |
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rslt = leastsq(fun_err, |
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rslt = leastsq(fun_err, |
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@ -220,6 +223,10 @@ def fit_func(Funct, Data=None, Guess=None, x=None, y=None, |
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**opts |
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**opts |
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) |
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) |
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keys = ('xopt', 'cov_x', 'infodict', 'mesg', 'ier') # ier = error message code from MINPACK |
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keys = ('xopt', 'cov_x', 'infodict', 'mesg', 'ier') # ier = error message code from MINPACK |
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extra_keys = { |
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# map the output values to the same keyword as other methods below: |
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'funcalls': (lambda : rslt[2]['nfev']), |
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} |
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elif method == 'fmin': |
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elif method == 'fmin': |
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# Nelder-Mead Simplex algorithm |
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# Nelder-Mead Simplex algorithm |
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rslt = fmin(fun_err2, |
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rslt = fmin(fun_err2, |
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@ -260,9 +267,12 @@ def fit_func(Funct, Data=None, Guess=None, x=None, y=None, |
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print "chi square = ", last_chi_sqr / len(y) |
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print "chi square = ", last_chi_sqr / len(y) |
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if outfmt == 1: |
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if outfmt == 1: |
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return rslt[0] |
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return rslt[0] |
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else: |
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else: # outfmt == 0 -- full result. |
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rec = fit_result(dict(zip(keys, rslt))) |
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rec = fit_result(dict(zip(keys, rslt))) |
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rec['chi_square'] = chi_sqr |
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rec['chi_square'] = chi_sqr |
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rec['fit_method'] = method |
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rec['fit_method'] = method |
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# If there are extra keys, record them here: |
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for (k,v) in extra_keys.iteritems(): |
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rec[k] = v() |
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return rec |
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return rec |
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