and the "g09.slurm" backend script. Signatures: # -rwxr-xr-x 1 wpurwant users 394 2020-09-10 01:06:20 g09.slurm # -rwxr-xr-x 1 wpurwant users 1120 2019-09-16 15:24:20 g09slurm # 387f828b04454678b23b05af61e4f334 g09.slurm # 9ee4bfcfad766165a81239cb13d7ef30 g09slurm # e0dbc8b24aeecbbecf7255a3e3f84dc3fc3a422f g09.slurm # d5a33e554766c41f17f6839242c5c7f4d60e7fe4 g09slurm g09.slurm is originally located at /cm/shared/apps/gaussian/g09revD.01/script/g09/script/g09.slurmmaster
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#!/bin/tcsh |
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setenv g09root /cm/shared/apps/gaussian/g09revD.01 |
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if ($?USETMPFS ) then |
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setenv tmpG09 /tmp/${SLURM_JOB_NAME}.o${SLURM_JOB_ID}.tmp |
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else |
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setenv tmpG09 /${SLURM_SUBMIT_DIR}/${SLURM_JOB_NAME}.o${SLURM_JOB_ID}.tmp |
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endif |
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mkdir $tmpG09 |
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setenv GAUSS_SCRDIR $tmpG09 |
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source $g09root/g09/bsd/g09.login |
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g09 < $1 |
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rmdir --ignore-fail-on-non-empty $tmpG09 |
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#!/bin/bash |
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if [ $# -lt 1 ]; then |
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echo "Error: Missing Gaussian G09 input file" |
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exit -1 |
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fi |
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if [ $# -lt 2 ]; then |
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echo "Error: require a filename for Gaussian G09 output" |
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exit -1 |
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fi |
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if [ ! -r $1 ]; then |
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echo "Error: Unable to open Gaussian G09 input file" |
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exit -1 |
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fi |
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input_file=$1 |
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output_file=$2 |
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begin_date=$3 |
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ncpus=$(grep -w nprocshared ./$1|awk '{print gensub("%nprocshared=","","G")}'|grep -v !) |
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if [ -z "$ncpus" ]; then |
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ncpus=$(grep -w nproc ./$1|awk '{print gensub("%nproc=","","G")}'|grep -v !) |
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fi |
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if [ -z "$ncpus" ]; then |
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ncpus=1 |
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fi |
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if [ -z "$begin_date" ]; then |
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begin_date=now |
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fi |
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if [ -f "$output_file" ]; then |
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read -p "Output file $output_file already exists, do you want overwrite? [N/y]" confirm |
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if [ "$confirm" = "y" ]; then |
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> "$output_file" |
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fi |
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fi |
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#--partition=phi \ |
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/shared/apps/common/slurm/current/bin/sbatch \ |
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--job-name=G09-$input_file \ |
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--ntasks=1 \ |
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--cpus-per-task=$ncpus \ |
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--output=$output_file \ |
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--begin=$begin_date \ |
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/cm/shared/apps/gaussian/g09revD.01/script/g09/script/g09.slurm $input_file |
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