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Lessons and Tutorials for Containers in HPC (and Cloud)
"Containers on HPC and Cloud with Singularity" https://pawseysc.github.io/singularity-containers/ https://github.com/pawseySC/singularity-containers
- Introduction to containers
- Basics of Singularity
- Share files with the host: BLAST, a bioinformatics demo
- Build and share your own container image
- Inside a build definition file
- Building images with Docker
- GUI enabled web applications: RStudio in a container
- Making Python not awful with containers
- Computational Fluid Dynamics with MPI containers
- Set up writable containers: another bio example with Trinity
- Molecular dynamics with GPU containers
- Reproducible scientific workflows
- GUI applications using X11 windows: the Gnuplot example
- Streamline the user experience: bash wrappers and modules
- Setup Singularity on your machine
- Overview of Docker
- Run multi-component web services with Docker Compose
- Other notable container tools