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Lessons and Tutorials for Containers in HPC (and Cloud) |
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"Containers on HPC and Cloud with Singularity" |
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https://pawseysc.github.io/singularity-containers/ |
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https://github.com/pawseySC/singularity-containers |
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1. Introduction to containers |
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2. Basics of Singularity |
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3. Share files with the host: BLAST, a bioinformatics demo |
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4. Build and share your own container image |
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5. Inside a build definition file |
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6. Building images with Docker |
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7. GUI enabled web applications: RStudio in a container |
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8. Making Python not awful with containers |
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9. Computational Fluid Dynamics with MPI containers |
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10. Set up writable containers: another bio example with Trinity |
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11. Molecular dynamics with GPU containers |
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12. Reproducible scientific workflows |
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13. GUI applications using X11 windows: the Gnuplot example |
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14. Streamline the user experience: bash wrappers and modules |
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15. Setup Singularity on your machine |
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16. Overview of Docker |
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17. Run multi-component web services with Docker Compose |
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18. Other notable container tools |
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