From 00e0dbb00ecee54b0e3ec42e7b68f92314469793 Mon Sep 17 00:00:00 2001 From: Wirawan Purwanto Date: Thu, 24 Mar 2022 15:23:26 -0400 Subject: [PATCH] * Initial pointer for lesson(s) & tutorial(s) on containers on HPC. --- containers/20210629.Container-HPC-lessons.txt | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 containers/20210629.Container-HPC-lessons.txt diff --git a/containers/20210629.Container-HPC-lessons.txt b/containers/20210629.Container-HPC-lessons.txt new file mode 100644 index 0000000..c403c79 --- /dev/null +++ b/containers/20210629.Container-HPC-lessons.txt @@ -0,0 +1,30 @@ +Lessons and Tutorials for Containers in HPC (and Cloud) +======================================================= + + +"Containers on HPC and Cloud with Singularity" +https://pawseysc.github.io/singularity-containers/ +https://github.com/pawseySC/singularity-containers + +1. Introduction to containers +2. Basics of Singularity +3. Share files with the host: BLAST, a bioinformatics demo +4. Build and share your own container image +5. Inside a build definition file +6. Building images with Docker +7. GUI enabled web applications: RStudio in a container +8. Making Python not awful with containers +9. Computational Fluid Dynamics with MPI containers +10. Set up writable containers: another bio example with Trinity +11. Molecular dynamics with GPU containers +12. Reproducible scientific workflows +13. GUI applications using X11 windows: the Gnuplot example +14. Streamline the user experience: bash wrappers and modules +15. Setup Singularity on your machine +16. Overview of Docker +17. Run multi-component web services with Docker Compose +18. Other notable container tools + + + +